IL_5J4D_206
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 5J4D|1|FB|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_206 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.0511
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5J4D|1|FB|G|662
5J4D|1|FB|A|663
5J4D|1|FB|G|664
5J4D|1|FB|A|665
5J4D|1|FB|G|666
*
5J4D|1|FB|U|740
5J4D|1|FB|G|741
5J4D|1|FB|G|742
5J4D|1|FB|U|743
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S ribosomal protein S15
- Chain FD
- 30S ribosomal protein S18
- Chain TC
- 30S ribosomal protein S6
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