IL_5J4D_211
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_211 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0748
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|FB|G|887
5J4D|1|FB|G|888
5J4D|1|FB|A|889
5J4D|1|FB|G|890
5J4D|1|FB|U|891
5J4D|1|FB|A|892
5J4D|1|FB|C|893
5J4D|1|FB|G|894
*
5J4D|1|FB|U|905
5J4D|1|FB|G|906
5J4D|1|FB|A|907
5J4D|1|FB|A|908
5J4D|1|FB|A|909
5J4D|1|FB|C|910
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain ED
- 30S ribosomal protein S17
- Chain ZC
- 30S ribosomal protein S12
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