IL_5J4D_354
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_354 not in the Motif Atlas
- Homologous match to IL_9DFE_114
- Geometric discrepancy: 0.0701
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5J4D|1|HB|C|71
5J4D|1|HB|G|72
5J4D|1|HB|A|73
5J4D|1|HB|U|74
5J4D|1|HB|G|75
5J4D|1|HB|G|76
5J4D|1|HB|U|77
5J4D|1|HB|A|78
5J4D|1|HB|C|79
*
5J4D|1|HB|G|97
5J4D|1|HB|G|98
5J4D|1|HB|A|99
5J4D|1|HB|G|100
5J4D|1|HB|A|101
5J4D|1|HB|G|102
5J4D|1|HB|U|103
5J4D|1|HB|A|104
5J4D|1|HB|G|105
Current chains
- Chain HB
- 5S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L25
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 50S ribosomal protein L16
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