IL_9DFE_114

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9DFE|1|1B|C|71
9DFE|1|1B|G|72
9DFE|1|1B|A|73
9DFE|1|1B|U|74
9DFE|1|1B|G|75
9DFE|1|1B|G|76
9DFE|1|1B|U|77
9DFE|1|1B|A|78
9DFE|1|1B|C|79
*
9DFE|1|1B|G|98
9DFE|1|1B|G|99
9DFE|1|1B|A|100
9DFE|1|1B|G|101
9DFE|1|1B|A|102
9DFE|1|1B|G|103
9DFE|1|1B|U|104
9DFE|1|1B|A|105
9DFE|1|1B|G|106

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25