IL_5J7L_090

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5J7L|1|BA|A|532, 5J7L|1|BA|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_090 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.23

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|BA|G|515
5J7L|1|BA|PSU|516
5J7L|1|BA|G|517
5J7L|1|BA|C|518
5J7L|1|BA|C|519
5J7L|1|BA|A|520
5J7L|1|BA|G|521
*
5J7L|1|BA|C|528
5J7L|1|BA|G|529
5J7L|1|BA|G|530
5J7L|1|BA|U|531
5J7L|1|BA|A|532
5J7L|1|BA|A|533
5J7L|1|BA|U|534
5J7L|1|BA|A|535
5J7L|1|BA|C|536

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12