IL_5J88_088

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5J88|1|BA|A|532, 5J88|1|BA|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_088 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2287

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5J88|1|BA|G|515
5J88|1|BA|PSU|516
5J88|1|BA|G|517
5J88|1|BA|C|518
5J88|1|BA|C|519
5J88|1|BA|A|520
5J88|1|BA|G|521
*
5J88|1|BA|C|528
5J88|1|BA|G|529
5J88|1|BA|G|530
5J88|1|BA|U|531
5J88|1|BA|A|532
5J88|1|BA|A|533
5J88|1|BA|U|534
5J88|1|BA|A|535
5J88|1|BA|C|536

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12