IL_5J88_093
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 5J88|1|BA|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_093 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0585
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5J88|1|BA|U|605
5J88|1|BA|G|606
5J88|1|BA|A|607
5J88|1|BA|A|608
5J88|1|BA|A|609
5J88|1|BA|U|610
5J88|1|BA|C|611
5J88|1|BA|C|612
*
5J88|1|BA|G|628
5J88|1|BA|A|629
5J88|1|BA|A|630
5J88|1|BA|C|631
5J88|1|BA|U|632
5J88|1|BA|G|633
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BD
- 30S ribosomal protein S4
- Chain BH
- 30S ribosomal protein S8
- Chain BP
- 30S ribosomal protein S16
- Chain BQ
- 30S ribosomal protein S17
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