IL_5J88_111
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CAG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 5J88|1|BA|A|1196, 5J88|1|BA|A|1197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_111 not in the Motif Atlas
- Geometric match to IL_5Z1I_002
- Geometric discrepancy: 0.2229
- The information below is about IL_5Z1I_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
5J88|1|BA|C|1059
5J88|1|BA|A|1060
5J88|1|BA|G|1061
*
5J88|1|BA|C|1195
5J88|1|BA|A|1196
5J88|1|BA|A|1197
5J88|1|BA|G|1198
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BC
- 30S ribosomal protein S3
- Chain BE
- 30S ribosomal protein S5
- Chain BJ
- 30S ribosomal protein S10
- Chain BN
- 30S ribosomal protein S14
Coloring options: