IL_5J88_195

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5J88|1|CA|A|1801, 5J88|1|CA|C|1816, 5J88|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_195 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1033

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5J88|1|CA|U|1798
5J88|1|CA|G|1799
5J88|1|CA|C|1800
5J88|1|CA|A|1801
5J88|1|CA|A|1802
5J88|1|CA|A|1803
5J88|1|CA|C|1804
*
5J88|1|CA|G|1813
5J88|1|CA|G|1814
5J88|1|CA|A|1815
5J88|1|CA|C|1816
5J88|1|CA|G|1817
5J88|1|CA|U|1818
5J88|1|CA|A|1819
5J88|1|CA|U|1820
5J88|1|CA|A|1821

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2