IL_5J88_227
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5J88|1|CA|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_227 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.0884
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5J88|1|CA|C|2636
5J88|1|CA|U|2637
5J88|1|CA|G|2638
5J88|1|CA|A|2639
5J88|1|CA|G|2640
*
5J88|1|CA|C|2774
5J88|1|CA|G|2775
5J88|1|CA|A|2776
5J88|1|CA|G|2777
5J88|1|CA|A|2778
5J88|1|CA|U|2779
5J88|1|CA|G|2780
5J88|1|CA|A|2781
5J88|1|CA|G|2782
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CD
- 50S ribosomal protein L3
- Chain CK
- 50S ribosomal protein L13
Coloring options: