IL_5J8A_063
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8A_063 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.0209
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J8A|1|AA|A|1430
5J8A|1|AA|A|1431
5J8A|1|AA|G|1432
5J8A|1|AA|A|1433
5J8A|1|AA|A|1434
5J8A|1|AA|G|1435
*
5J8A|1|AA|C|1466
5J8A|1|AA|C|1467
5J8A|1|AA|A|1468
5J8A|1|AA|C|1469
5J8A|1|AA|U|1470
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AT
- 30S ribosomal protein S20
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DL
- 50S ribosomal protein L14
- Chain DQ
- 50S ribosomal protein L19
Coloring options: