IL_5J8A_100

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5J8A|1|BA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_100 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0314

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5J8A|1|BA|U|684
5J8A|1|BA|G|685
5J8A|1|BA|U|686
5J8A|1|BA|A|687
5J8A|1|BA|G|688
*
5J8A|1|BA|C|699
5J8A|1|BA|G|700
5J8A|1|BA|U|701
5J8A|1|BA|A|702
5J8A|1|BA|G|703
5J8A|1|BA|A|704
5J8A|1|BA|G|705
5J8A|1|BA|A|706

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BK

30S ribosomal protein S11

Chain CA

Large subunit ribosomal RNA; LSU rRNA