IL_5J8A_198

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5J8A|1|CA|A|1801, 5J8A|1|CA|C|1816, 5J8A|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_198 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0729

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5J8A|1|CA|U|1798
5J8A|1|CA|G|1799
5J8A|1|CA|C|1800
5J8A|1|CA|A|1801
5J8A|1|CA|A|1802
5J8A|1|CA|A|1803
5J8A|1|CA|C|1804
*
5J8A|1|CA|G|1813
5J8A|1|CA|G|1814
5J8A|1|CA|A|1815
5J8A|1|CA|C|1816
5J8A|1|CA|G|1817
5J8A|1|CA|U|1818
5J8A|1|CA|A|1819
5J8A|1|CA|U|1820
5J8A|1|CA|A|1821

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2