IL_5J8A_233

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

5J8A|1|CA|U|2689, 5J8A|1|CA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_233 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0741

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5J8A|1|CA|U|2687
5J8A|1|CA|G|2688
5J8A|1|CA|U|2689
5J8A|1|CA|U|2690
5J8A|1|CA|C|2691
*
5J8A|1|CA|G|2718
5J8A|1|CA|G|2719
5J8A|1|CA|U|2720
5J8A|1|CA|A|2721
5J8A|1|CA|G|2722

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CO

50S ribosomal protein L17

Chain CQ

50S ribosomal protein L19