IL_5J8A_398
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUGAUGUGUAGGAUAG*CCUUUAAUG
- Length
- 27 nucleotides
- Bulged bases
- 5J8A|1|DA|U|2111, 5J8A|1|DA|A|2114, 5J8A|1|DA|G|2115, 5J8A|1|DA|G|2116, 5J8A|1|DA|A|2117, 5J8A|1|DA|U|2118, 5J8A|1|DA|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8A_398 not in the Motif Atlas
- Homologous match to IL_5J7L_397
- Geometric discrepancy: 0.0075
- The information below is about IL_5J7L_397
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54737.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
5J8A|1|DA|C|2103
5J8A|1|DA|C|2104
5J8A|1|DA|U|2105
5J8A|1|DA|U|2106
5J8A|1|DA|G|2107
5J8A|1|DA|A|2108
5J8A|1|DA|U|2109
5J8A|1|DA|G|2110
5J8A|1|DA|U|2111
5J8A|1|DA|G|2112
5J8A|1|DA|U|2113
5J8A|1|DA|A|2114
5J8A|1|DA|G|2115
5J8A|1|DA|G|2116
5J8A|1|DA|A|2117
5J8A|1|DA|U|2118
5J8A|1|DA|A|2119
5J8A|1|DA|G|2120
*
5J8A|1|DA|C|2178
5J8A|1|DA|C|2179
5J8A|1|DA|U|2180
5J8A|1|DA|U|2181
5J8A|1|DA|U|2182
5J8A|1|DA|A|2183
5J8A|1|DA|A|2184
5J8A|1|DA|U|2185
5J8A|1|DA|G|2186
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: