IL_5J8B_012

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5J8B|1|A|A|306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_012 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1356

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5J8B|1|A|C|303
5J8B|1|A|G|304
5J8B|1|A|A|305
5J8B|1|A|A|306
5J8B|1|A|U|307
*
5J8B|1|A|A|380
5J8B|1|A|U|381
5J8B|1|A|A|382
5J8B|1|A|G|383

Current chains

Chain A

23S Ribosomal RNA

Nearby chains