IL_5J8B_015
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 5J8B|1|A|U|528, 5J8B|1|A|G|532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_015 not in the Motif Atlas
- Geometric match to IL_7RQB_014
- Geometric discrepancy: 0.052
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5J8B|1|A|G|506
5J8B|1|A|A|507
5J8B|1|A|A|508
5J8B|1|A|C|509
*
5J8B|1|A|G|520
5J8B|1|A|A|521
5J8B|1|A|G|522
5J8B|1|A|U|523
5J8B|1|A|G|524
5J8B|1|A|A|525
5J8B|1|A|A|526
5J8B|1|A|A|527
5J8B|1|A|U|528
5J8B|1|A|A|529
5J8B|1|A|G|530
5J8B|1|A|A|531
5J8B|1|A|G|532
5J8B|1|A|C|533
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L24
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