IL_5J8B_016
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_016 not in the Motif Atlas
- Geometric match to IL_4WF9_017
- Geometric discrepancy: 0.0726
- The information below is about IL_4WF9_017
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
5J8B|1|A|C|586
5J8B|1|A|C|587
5J8B|1|A|U|588
*
5J8B|1|A|A|597
5J8B|1|A|U|598
5J8B|1|A|G|599
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain F
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
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