IL_5J8B_019

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5J8B|1|A|G|847, 5J8B|1|A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_019 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0467

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J8B|1|A|G|720
5J8B|1|A|A|721
5J8B|1|A|A|722
5J8B|1|A|A|723
5J8B|1|A|C|724
*
5J8B|1|A|G|845
5J8B|1|A|A|846
5J8B|1|A|G|847
5J8B|1|A|A|848
5J8B|1|A|U|849
5J8B|1|A|A|850
5J8B|1|A|G|851
5J8B|1|A|C|852

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15