IL_5J8B_031

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUAGG*CCAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_031 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3312

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5J8B|1|A|G|921
5J8B|1|A|C|922
5J8B|1|A|U|923
5J8B|1|A|A|924
5J8B|1|A|G|925
5J8B|1|A|G|926
*
5J8B|1|A|C|942
5J8B|1|A|C|943
5J8B|1|A|A|944
5J8B|1|A|A|945
5J8B|1|A|A|946
5J8B|1|A|C|947

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L16

Chain w

Transfer RNA; tRNA