IL_5J8B_035
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5J8B|1|A|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_035 not in the Motif Atlas
- Homologous match to IL_7RQB_036
- Geometric discrepancy: 0.0466
- The information below is about IL_7RQB_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5J8B|1|A|C|1043
5J8B|1|A|U|1044
5J8B|1|A|A|1045
5J8B|1|A|A|1046
5J8B|1|A|G|1047
*
5J8B|1|A|C|1198
5J8B|1|A|G|1199
5J8B|1|A|A|1200
5J8B|1|A|A|1201
5J8B|1|A|G|1202
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
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