IL_5J8B_039
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5J8B|1|A|U|1071, 5J8B|1|A|A|1172, 5J8B|1|A|U|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_039 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0588
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|A|G|1069
5J8B|1|A|G|1070
5J8B|1|A|U|1071
5J8B|1|A|A|1072
5J8B|1|A|A|1073
5J8B|1|A|A|1074
5J8B|1|A|G|1075
*
5J8B|1|A|C|1169
5J8B|1|A|G|1170
5J8B|1|A|A|1171
5J8B|1|A|A|1172
5J8B|1|A|A|1173
5J8B|1|A|A|1174
5J8B|1|A|U|1175
5J8B|1|A|G|1176
5J8B|1|A|A|1177
5J8B|1|A|U|1178
5J8B|1|A|C|1179
5J8B|1|A|G|1180
5J8B|1|A|G|1181
5J8B|1|A|G|1182
5J8B|1|A|G|1183
5J8B|1|A|C|1184
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L16
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