IL_5J8B_042
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUG*CAUC
- Length
- 8 nucleotides
- Bulged bases
- 5J8B|1|A|U|1106
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_042 not in the Motif Atlas
- Geometric match to IL_1MMS_001
- Geometric discrepancy: 0.1621
- The information below is about IL_1MMS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92446.2
- Basepair signature
- cWW-cWW-R-L-L
- Number of instances in this motif group
- 5
Unit IDs
5J8B|1|A|G|1104
5J8B|1|A|U|1105
5J8B|1|A|U|1106
5J8B|1|A|G|1107
*
5J8B|1|A|C|1121
5J8B|1|A|A|1122
5J8B|1|A|U|1123
5J8B|1|A|C|1124
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L11
- Chain Q
- 50S ribosomal protein L16
- Chain w
- Transfer RNA; tRNA
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