IL_5J8B_046
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5J8B|1|A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_046 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.0402
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
5J8B|1|A|C|1252
5J8B|1|A|G|1253
5J8B|1|A|A|1254
5J8B|1|A|U|1255
5J8B|1|A|G|1256
5J8B|1|A|A|1257
5J8B|1|A|A|1258
5J8B|1|A|G|1259
*
5J8B|1|A|U|1279
5J8B|1|A|G|1280
5J8B|1|A|G|1281
5J8B|1|A|A|1282
5J8B|1|A|G|1283
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L20
Coloring options: