IL_5J8B_060

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

5J8B|1|A|C|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_060 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.2214

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5J8B|1|A|U|1527
5J8B|1|A|G|1528
*
5J8B|1|A|C|1551
5J8B|1|A|A|1552
5J8B|1|A|A|1553
5J8B|1|A|C|1554
5J8B|1|A|A|1555
5J8B|1|A|A|1556
5J8B|1|A|G|1557

Current chains

Chain A

23S Ribosomal RNA

Nearby chains