IL_5J8B_062

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5J8B|1|A|C|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_062 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0761

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J8B|1|A|G|1571
5J8B|1|A|G|1572
5J8B|1|A|A|1573
5J8B|1|A|A|1574
5J8B|1|A|G|1575
*
5J8B|1|A|U|1586
5J8B|1|A|G|1587
5J8B|1|A|A|1588
5J8B|1|A|C|1589
5J8B|1|A|A|1590
5J8B|1|A|A|1591
5J8B|1|A|C|1592

Current chains

Chain A

23S Ribosomal RNA

Nearby chains