IL_5J8B_073
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_073 not in the Motif Atlas
- Homologous match to IL_7RQB_074
- Geometric discrepancy: 0.1097
- The information below is about IL_7RQB_074
- Detailed Annotation
- UAA/GAN with extra stack
- Broad Annotation
- No text annotation
- Motif group
- IL_90318.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5J8B|1|A|U|1881
5J8B|1|A|C|1882
5J8B|1|A|A|1883
5J8B|1|A|A|1884
5J8B|1|A|G|1885
*
5J8B|1|A|C|1908
5J8B|1|A|G|1909
5J8B|1|A|A|1910
5J8B|1|A|A|1911
5J8B|1|A|G|1912
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain y
- Transfer RNA; tRNA
Coloring options: