IL_5J8B_084
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_084 not in the Motif Atlas
- Geometric match to IL_3U4M_002
- Geometric discrepancy: 0.158
- The information below is about IL_3U4M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32056.1
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
5J8B|1|A|G|2131
5J8B|1|A|C|2132
5J8B|1|A|G|2133
5J8B|1|A|U|2134
5J8B|1|A|A|2135
5J8B|1|A|G|2136
5J8B|1|A|G|2137
5J8B|1|A|A|2138
5J8B|1|A|U|2139
5J8B|1|A|A|2140
5J8B|1|A|G|2141
*
5J8B|1|A|C|2199
5J8B|1|A|C|2200
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L1
- Chain y
- Transfer RNA; tRNA
Coloring options: