IL_5J8B_101

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_101 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0858

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5J8B|1|A|C|2663
5J8B|1|A|U|2664
5J8B|1|A|A|2665
5J8B|1|A|G|2666
5J8B|1|A|U|2667
5J8B|1|A|A|2668
5J8B|1|A|C|2669
*
5J8B|1|A|G|2674
5J8B|1|A|G|2675
5J8B|1|A|A|2676
5J8B|1|A|C|2677
5J8B|1|A|C|2678
5J8B|1|A|G|2679

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain z

GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4