IL_5J8B_103
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUCC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5J8B|1|A|U|2700, 5J8B|1|A|C|2701
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_103 not in the Motif Atlas
- Homologous match to IL_7RQB_105
- Geometric discrepancy: 0.0597
- The information below is about IL_7RQB_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_08296.3
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|A|U|2698
5J8B|1|A|U|2699
5J8B|1|A|U|2700
5J8B|1|A|C|2701
5J8B|1|A|C|2702
*
5J8B|1|A|G|2730
5J8B|1|A|G|2731
5J8B|1|A|U|2732
5J8B|1|A|A|2733
5J8B|1|A|G|2734
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L19
Coloring options: