IL_5J8B_105
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 5J8B|1|A|A|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_105 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.1537
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5J8B|1|A|G|2749
5J8B|1|A|A|2750
5J8B|1|A|U|2751
5J8B|1|A|A|2752
5J8B|1|A|A|2753
5J8B|1|A|C|2754
*
5J8B|1|A|G|2774
5J8B|1|A|G|2775
5J8B|1|A|A|2776
5J8B|1|A|A|2777
5J8B|1|A|G|2778
5J8B|1|A|C|2779
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain H
- 50S ribosomal protein L6
- Chain N
- 50S ribosomal protein L13
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