IL_5J8B_108
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_108 not in the Motif Atlas
- Homologous match to IL_7RQB_110
- Geometric discrepancy: 0.0664
- The information below is about IL_7RQB_110
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.5
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8B|1|A|U|2856
5J8B|1|A|G|2857
5J8B|1|A|U|2858
5J8B|1|A|A|2859
5J8B|1|A|A|2860
5J8B|1|A|G|2861
*
5J8B|1|A|U|2874
5J8B|1|A|U|2875
5J8B|1|A|G|2876
5J8B|1|A|A|2877
5J8B|1|A|G|2878
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain R
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: