IL_5J8B_122
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5J8B|1|a|U|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_122 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.0889
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5J8B|1|a|G|143
5J8B|1|a|A|144
5J8B|1|a|C|145
5J8B|1|a|A|146
5J8B|1|a|A|147
5J8B|1|a|C|148
*
5J8B|1|a|G|163
5J8B|1|a|C|164
5J8B|1|a|U|165
5J8B|1|a|A|166
5J8B|1|a|A|167
5J8B|1|a|U|168
5J8B|1|a|C|169
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain t
- 30S ribosomal protein S20
Coloring options: