IL_5J8B_144

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5J8B|1|a|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_144 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0853

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5J8B|1|a|G|667
5J8B|1|a|A|668
5J8B|1|a|G|669
5J8B|1|a|U|670
5J8B|1|a|A|671
5J8B|1|a|G|672
*
5J8B|1|a|C|683
5J8B|1|a|G|684
5J8B|1|a|C|685
5J8B|1|a|A|686
5J8B|1|a|G|687
5J8B|1|a|A|688
5J8B|1|a|U|689
5J8B|1|a|A|690
5J8B|1|a|C|691

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11