IL_5J8B_158
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUGC*GGCACUC
- Length
- 12 nucleotides
- Bulged bases
- 5J8B|1|a|U|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_158 not in the Motif Atlas
- Homologous match to IL_4LFB_048
- Geometric discrepancy: 0.3079
- The information below is about IL_4LFB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85222.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
5J8B|1|a|G|1107
5J8B|1|a|U|1108
5J8B|1|a|U|1109
5J8B|1|a|G|1110
5J8B|1|a|C|1111
*
5J8B|1|a|G|1126
5J8B|1|a|G|1127
5J8B|1|a|C|1128
5J8B|1|a|A|1129
5J8B|1|a|C|1130
5J8B|1|a|U|1131
5J8B|1|a|C|1132
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
Coloring options: