IL_5J8B_160
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_160 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.0782
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J8B|1|a|U|1229
5J8B|1|a|A|1230
5J8B|1|a|C|1231
5J8B|1|a|A|1232
5J8B|1|a|A|1233
5J8B|1|a|A|1234
5J8B|1|a|G|1235
*
5J8B|1|a|C|1266
5J8B|1|a|A|1267
5J8B|1|a|A|1268
5J8B|1|a|A|1269
5J8B|1|a|A|1270
5J8B|1|a|A|1271
5J8B|1|a|G|1272
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
- Chain u
- 30S ribosomal protein Thx
Coloring options: