IL_5J8B_161

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5J8B|1|a|U|1239, 5J8B|1|a|A|1262, 5J8B|1|a|U|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_161 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1225

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5J8B|1|a|G|1237
5J8B|1|a|A|1238
5J8B|1|a|U|1239
5J8B|1|a|G|1240
*
5J8B|1|a|C|1259
5J8B|1|a|U|1260
5J8B|1|a|A|1261
5J8B|1|a|A|1262
5J8B|1|a|U|1263
5J8B|1|a|C|1264

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z