IL_5J8B_165
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 5J8B|1|a|C|1383, 5J8B|1|a|A|1481
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_165 not in the Motif Atlas
- Geometric match to IL_4V88_463
- Geometric discrepancy: 0.1751
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J8B|1|a|C|1382
5J8B|1|a|C|1383
5J8B|1|a|G|1384
*
5J8B|1|a|C|1479
5J8B|1|a|A|1480
5J8B|1|a|A|1481
5J8B|1|a|G|1482
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain v
- mRNA
- Chain x
- Transfer RNA; tRNA
Coloring options: