IL_5J8B_183
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_183 not in the Motif Atlas
- Homologous match to IL_3U4M_003
- Geometric discrepancy: 0.1448
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
5J8B|1|A|G|2145
5J8B|1|A|G|2146
5J8B|1|A|A|2147
5J8B|1|A|G|2148
*
5J8B|1|A|C|2182
5J8B|1|A|G|2183
5J8B|1|A|C|2184
5J8B|1|A|C|2185
5J8B|1|A|G|2186
5J8B|1|A|G|2187
5J8B|1|A|U|2188
5J8B|1|A|G|2189
5J8B|1|A|A|2190
5J8B|1|A|A|2191
5J8B|1|A|A|2192
5J8B|1|A|U|2193
5J8B|1|A|A|2194
5J8B|1|A|C|2195
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L1
- Chain y
- Transfer RNA; tRNA
Coloring options: