IL_5J91_035

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5J91|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0369

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5J91|1|AA|U|684
5J91|1|AA|G|685
5J91|1|AA|U|686
5J91|1|AA|A|687
5J91|1|AA|G|688
*
5J91|1|AA|C|699
5J91|1|AA|G|700
5J91|1|AA|U|701
5J91|1|AA|A|702
5J91|1|AA|G|703
5J91|1|AA|A|704
5J91|1|AA|G|705
5J91|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA