IL_5J91_162

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5J91|1|CA|C|995

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_162 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0498

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

5J91|1|CA|C|994
5J91|1|CA|C|995
5J91|1|CA|A|996
*
5J91|1|CA|U|1159
5J91|1|CA|G|1160

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L30

Chain CK

50S ribosomal protein L13

Chain CR

50S ribosomal protein L20

Chain CS

50S ribosomal protein L21