IL_5J91_166

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5J91|1|CA|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_166 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5J91|1|CA|U|1018
5J91|1|CA|U|1019
5J91|1|CA|A|1020
5J91|1|CA|A|1021
5J91|1|CA|G|1022
5J91|1|CA|U|1023
5J91|1|CA|G|1024
*
5J91|1|CA|C|1140
5J91|1|CA|U|1141
5J91|1|CA|A|1142
5J91|1|CA|A|1143
5J91|1|CA|A|1144

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6

Chain CK

50S ribosomal protein L13