IL_5J91_232

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5J91|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_232 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0606

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5J91|1|CA|C|2636
5J91|1|CA|U|2637
5J91|1|CA|G|2638
5J91|1|CA|A|2639
5J91|1|CA|G|2640
*
5J91|1|CA|C|2774
5J91|1|CA|G|2775
5J91|1|CA|A|2776
5J91|1|CA|G|2777
5J91|1|CA|A|2778
5J91|1|CA|U|2779
5J91|1|CA|G|2780
5J91|1|CA|A|2781
5J91|1|CA|G|2782

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L13