IL_5JC9_199

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5JC9|1|CA|A|1801, 5JC9|1|CA|C|1816, 5JC9|1|CA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_199 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0618

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5JC9|1|CA|U|1798
5JC9|1|CA|G|1799
5JC9|1|CA|C|1800
5JC9|1|CA|A|1801
5JC9|1|CA|A|1802
5JC9|1|CA|A|1803
5JC9|1|CA|C|1804
*
5JC9|1|CA|G|1813
5JC9|1|CA|G|1814
5JC9|1|CA|A|1815
5JC9|1|CA|C|1816
5JC9|1|CA|G|1817
5JC9|1|CA|U|1818
5JC9|1|CA|A|1819
5JC9|1|CA|U|1820
5JC9|1|CA|A|1821

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2