IL_5JC9_233
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- UCACU*AAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JC9_233 not in the Motif Atlas
- Homologous match to IL_5J7L_347
- Geometric discrepancy: 0.0756
- The information below is about IL_5J7L_347
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
5JC9|1|CA|U|2680
5JC9|1|CA|C|2681
5JC9|1|CA|A|2682
5JC9|1|CA|C|2683
5JC9|1|CA|U|2684
*
5JC9|1|CA|A|2725
5JC9|1|CA|A|2726
5JC9|1|CA|A|2727
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CD
- 50S ribosomal protein L3
- Chain CL
- 50S ribosomal protein L14
- Chain CO
- 50S ribosomal protein L17
- Chain CQ
- 50S ribosomal protein L19
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