IL_5JCS_005

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_005 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.3313

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5JCS|1|x|C|525
5JCS|1|x|C|526
*
5JCS|1|x|G|566
5JCS|1|x|G|567
5JCS|1|x|G|568

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain M

60S ribosomal protein L14-A