IL_5JCS_009

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUC*GAUU

Length

7 nucleotides

Bulged bases

5JCS|1|x|U|776

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_009 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2647

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5JCS|1|x|A|755
5JCS|1|x|U|756
5JCS|1|x|C|757
*
5JCS|1|x|G|774
5JCS|1|x|A|775
5JCS|1|x|U|776
5JCS|1|x|U|777

Current chains

Chain x

25S ribosomal RNA

Nearby chains