IL_5JCS_019

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGCGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_019 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2492

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5JCS|1|x|G|1661
5JCS|1|x|G|1662
5JCS|1|x|C|1663
5JCS|1|x|G|1664
5JCS|1|x|C|1665
*
5JCS|1|x|G|1784
5JCS|1|x|U|1785
5JCS|1|x|G|1786
5JCS|1|x|A|1787
5JCS|1|x|C|1788

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A