IL_5JCS_044

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JCS_044 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2477

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5JCS|1|x|C|3235
5JCS|1|x|U|3236
5JCS|1|x|U|3237
5JCS|1|x|G|3238
*
5JCS|1|x|C|3249
5JCS|1|x|U|3250
5JCS|1|x|U|3251
5JCS|1|x|G|3252

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A