IL_5JCS_063
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AUACACG*CGUGUU
- Length
- 13 nucleotides
- Bulged bases
- 5JCS|1|x|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JCS_063 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3965
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JCS|1|x|A|1180
5JCS|1|x|U|1181
5JCS|1|x|A|1182
5JCS|1|x|C|1183
5JCS|1|x|A|1184
5JCS|1|x|C|1185
5JCS|1|x|G|1186
*
5JCS|1|x|C|1320
5JCS|1|x|G|1321
5JCS|1|x|U|1322
5JCS|1|x|G|1323
5JCS|1|x|U|1324
5JCS|1|x|U|1325
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
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